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RNA 3D Structure Analysis and Prediction

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Published by Springer Berlin Heidelberg in Berlin, Heidelberg .
Written in English

Subjects:

  • Biochemistry,
  • Nucleic acids,
  • Life sciences,
  • Biochemistry, general,
  • Nucleic Acid Chemistry

Book details:

Edition Notes

Statementedited by Neocles Leontis, Eric Westhof
SeriesNucleic Acids and Molecular Biology -- 27
ContributionsWesthof, Eric, SpringerLink (Online service)
Classifications
LC ClassificationsQD433-436
The Physical Object
Format[electronic resource] /
ID Numbers
Open LibraryOL27085777M
ISBN 109783642257407

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RNA 3D Structure Analysis and Prediction. Editors: Leontis, Neocles, Westhof, Eric (Eds.) Free Preview. First book on RNA 3D structure prediction based on sequence data alone; Gives a comprehensive overview on the current status and progress in the field; Covers a variety of RNA prediction methods. Integrated platform for de novo and homology modeling of RNA 3D structures, where coordinate file input, sequence editing, sequence alignment, structure prediction and analysis features are all accessed from one intuitive graphical user interface. Yes: RNAComposer: Fully automated prediction of large RNA 3D structures. Yes: webserver webserver.   RNA 3D Structure Analysis and Prediction. por. Nucleic Acids and Molecular Biology (Book 27) ¡Gracias por compartir! Has enviado la siguiente calificación y reseña. Lo publicaremos en nuestro sitio después de haberla : Springer Berlin Heidelberg. We focus our analysis on the non-WC base pairs and on RNA modules. Several computer programs have now been designed to predict RNA modules. We describe the RNA-Puzzles initiative, which is a community-wide, blind assessment of RNA 3D structure prediction programs to determine the capabilities and bottlenecks of current predictions.

Miao, Z., et al. () "RNA-Puzzles Round II: Assessment of RNA structure prediction programs applied to three large RNA structures." RNA 21 (6): - Paper. Link. Some recent manuscripts that describe this workflow in detail are. To generate 2D–3D structures, RNA-MoIP uses RNA secondary structure templates (generated by default with RNAsubopt, from the ViennaRNA package) in which it inserts candidate RNA 3D motifs. A distinctive aspect of RNA-MoIP lies in its ability to use a set of approximate candidate secondary structures instead of a single highly reliable. A software package that integrates three RNA analysis tools based on the abstract shapes approach: the analysis of shape representatives, the calculation of shape probabilities and the consensus shapes approach. Offers a user-friendly approach to the fully automated prediction of large RNA 3D structures. See analytics See tool page. RNA and RNA/protein. RNA structure prediction: Predict 3-dimensional structures of RNA from their nucleotide sequence. Read this first. RNA tools: Tools useful for RNA and RNA/proteinm including general PDB editing, cluster submission, job setup. RNA threading: Thread a new nucleotide sequence on an existing RNA structure.

A. Ribosomal RNA analysis. RNAstructure (webservers for RNA s econdary structure prediction) is a software package that includes structure prediction by free energy minimization, Rclick - this web server that is capable of superimposing RNA 3D structures by using clique matching and 3D . Search Tips. Phrase Searching You can use double quotes to search for a series of words in a particular order. For example, "World war II" (with quotes) will give more precise results than World war II (without quotes). Wildcard Searching If you want to search for multiple variations of a word, you can substitute a special symbol (called a "wildcard") for one or more letters. The RNAComposer system offers a new user-friendly approach to the fully automated prediction of large RNA 3D structures. The method is based on the machine translation principle and operates on the RNA FRABASE database acting as the dictionary relating RNA secondary structure and tertiary structure . RNA 3D Structure Analysis and Prediction (Nucleic Acids and Molecular Biology) th Edition by Neocles Leontis (Editor), Eric Westhof (Editor) ISBN ISBN Why is ISBN important? ISBN. This bar-code number lets you verify that you're getting exactly the right version or edition of a book. The digit and 10 Price: $